Detailed information of SNP:
|
SNP ID:
sf0202013925(Gbrowse)
Chromosome: chr02 Position: 2013925 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1410 | 72.62% | 27.38% |
| All Indica | 790 | 52.28% | 47.72% |
| All Japonica | 497 | 99.80% | 0.20% |
| Aus | 67 | 95.52% | 4.48% |
| Indica I | 369 | 53.12% | 46.88% |
| Indica II | 211 | 57.35% | 42.65% |
| Indica Intermediate | 210 | 45.71% | 54.29% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 88.10% | 11.90% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0202013925 | A->G | LOC_Os02g04530(LOC_Os02g04530.1) | Non-Synonymous SNP |