Detailed information of SNP:
|
SNP ID:
sf0202017706(Gbrowse)
Chromosome: chr02 Position: 2017706 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1417 | 74.31% | 25.69% |
| All Indica | 798 | 55.14% | 44.86% |
| All Japonica | 497 | 99.60% | 0.40% |
| Aus | 66 | 100.00% | 0.00% |
| Indica I | 374 | 54.55% | 45.45% |
| Indica II | 213 | 59.62% | 40.38% |
| Indica Intermediate | 211 | 51.66% | 48.34% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 90.48% | 9.52% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0202017706 | A->G | LOC_Os02g04530(LOC_Os02g04530.1) | Non-Synonymous SNP |