Detailed information of SNP:
|
SNP ID:
sf0202090631(Gbrowse)
Chromosome: chr02 Position: 2090631 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1416 | 78.46% | 21.54% |
| All Indica | 797 | 62.74% | 37.26% |
| All Japonica | 497 | 100.00% | 0.00% |
| Aus | 67 | 95.52% | 4.48% |
| Indica I | 374 | 53.48% | 46.52% |
| Indica II | 212 | 67.45% | 32.55% |
| Indica Intermediate | 211 | 74.41% | 25.59% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 87.80% | 12.20% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0202090631 | G->A | LOC_Os02g04660(LOC_Os02g04660.1) | INTRON |
| sf0202090631 | G->A | LOC_Os02g04660(LOC_Os02g04660.2) | INTRON |