Detailed information of SNP:
|
SNP ID:
sf0202124487(Gbrowse)
Chromosome: chr02 Position: 2124487 |
Major allele:
C
Minor allele: G Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1246 | 74.24% | 25.76% |
| All Indica | 655 | 55.11% | 44.89% |
| All Japonica | 496 | 100.00% | 0.00% |
| Aus | 42 | 47.62% | 52.38% |
| Indica I | 332 | 59.64% | 40.36% |
| Indica II | 174 | 55.75% | 44.25% |
| Indica Intermediate | 149 | 44.30% | 55.70% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 93 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 39 | 89.74% | 10.26% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0202124487 | C->G | INTERGENIC | None |