Detailed information of SNP:
|
SNP ID:
sf0202138774(Gbrowse)
Chromosome: chr02 Position: 2138774 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1419 | 51.09% | 48.91% |
| All Indica | 799 | 86.48% | 13.52% |
| All Japonica | 497 | 0.60% | 99.40% |
| Aus | 67 | 1.49% | 98.51% |
| Indica I | 375 | 77.33% | 22.67% |
| Indica II | 213 | 96.71% | 3.29% |
| Indica Intermediate | 211 | 92.42% | 7.58% |
| Temperate Japonica | 335 | 0.00% | 100.00% |
| Tropical Japonica | 94 | 1.06% | 98.94% |
| Japonica Intermediate | 68 | 2.94% | 97.06% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 40.48% | 59.52% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0202138774 | T->C | INTERGENIC | None |