Detailed information of SNP:
|
SNP ID:
sf0202159140(Gbrowse)
Chromosome: chr02 Position: 2159140 |
Major allele:
A
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1419 | 56.59% | 43.41% |
| All Indica | 799 | 88.61% | 11.39% |
| All Japonica | 497 | 1.01% | 98.99% |
| Aus | 67 | 76.12% | 23.88% |
| Indica I | 375 | 80.80% | 19.20% |
| Indica II | 213 | 98.12% | 1.88% |
| Indica Intermediate | 211 | 92.89% | 7.11% |
| Temperate Japonica | 335 | 0.30% | 99.70% |
| Tropical Japonica | 94 | 2.13% | 97.87% |
| Japonica Intermediate | 68 | 2.94% | 97.06% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 59.52% | 40.48% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0202159140 | G->A | INTERGENIC | None |