Detailed information of SNP:
|
SNP ID:
sf0202200150(Gbrowse)
Chromosome: chr02 Position: 2200150 |
Major allele:
G
Minor allele: T Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1411 | 80.37% | 19.63% |
| All Indica | 799 | 97.62% | 2.38% |
| All Japonica | 492 | 52.64% | 47.36% |
| Aus | 65 | 78.46% | 21.54% |
| Indica I | 375 | 96.00% | 4.00% |
| Indica II | 213 | 99.53% | 0.47% |
| Indica Intermediate | 211 | 98.58% | 1.42% |
| Temperate Japonica | 335 | 66.87% | 33.13% |
| Tropical Japonica | 91 | 14.29% | 85.71% |
| Japonica Intermediate | 66 | 33.33% | 66.67% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 73.17% | 26.83% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0202200150 | G->T | INTERGENIC | None |