Detailed information of SNP:
|
SNP ID:
sf0202240863(Gbrowse)
Chromosome: chr02 Position: 2240863 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1417 | 69.94% | 30.06% |
| All Indica | 798 | 88.22% | 11.78% |
| All Japonica | 497 | 49.50% | 50.50% |
| Aus | 67 | 5.97% | 94.03% |
| Indica I | 375 | 80.80% | 19.20% |
| Indica II | 213 | 96.24% | 3.76% |
| Indica Intermediate | 210 | 93.33% | 6.67% |
| Temperate Japonica | 335 | 64.18% | 35.82% |
| Tropical Japonica | 94 | 10.64% | 89.36% |
| Japonica Intermediate | 68 | 30.88% | 69.12% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 41 | 58.54% | 41.46% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0202240863 | G->A | INTERGENIC | None |