Detailed information of SNP:
|
SNP ID:
sf0202256730(Gbrowse)
Chromosome: chr02 Position: 2256730 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1397 | 59.48% | 40.52% |
| All Indica | 779 | 31.84% | 68.16% |
| All Japonica | 497 | 99.40% | 0.60% |
| Aus | 65 | 86.15% | 13.85% |
| Indica I | 363 | 43.25% | 56.75% |
| Indica II | 206 | 21.84% | 78.16% |
| Indica Intermediate | 210 | 21.90% | 78.10% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 97.06% | 2.94% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 42 | 76.19% | 23.81% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0202256730 | C->T | LOC_Os02g04880(LOC_Os02g04880.1) | INTRON |