Detailed information of SNP:
|
SNP ID:
sf0202261095(Gbrowse)
Chromosome: chr02 Position: 2261095 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1388 | 89.99% | 10.01% |
| All Indica | 799 | 99.75% | 0.25% |
| All Japonica | 467 | 72.38% | 27.62% |
| Aus | 67 | 98.51% | 1.49% |
| Indica I | 375 | 99.73% | 0.27% |
| Indica II | 213 | 99.53% | 0.47% |
| Indica Intermediate | 211 | 100.00% | 0.00% |
| Temperate Japonica | 314 | 78.03% | 21.97% |
| Tropical Japonica | 88 | 40.91% | 59.09% |
| Japonica Intermediate | 65 | 87.69% | 12.31% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 82.93% | 17.07% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0202261095 | T->C | INTERGENIC | None |