Detailed information of SNP:
|
SNP ID:
sf0202301164(Gbrowse)
Chromosome: chr02 Position: 2301164 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1377 | 69.50% | 30.50% |
| All Indica | 766 | 90.21% | 9.79% |
| All Japonica | 491 | 35.23% | 64.77% |
| Aus | 66 | 84.85% | 15.15% |
| Indica I | 356 | 96.35% | 3.65% |
| Indica II | 205 | 89.76% | 10.24% |
| Indica Intermediate | 205 | 80.00% | 20.00% |
| Temperate Japonica | 335 | 17.61% | 82.39% |
| Tropical Japonica | 88 | 81.82% | 18.18% |
| Japonica Intermediate | 68 | 61.76% | 38.24% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 40 | 57.50% | 42.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0202301164 | A->G | LOC_Os02g04940(LOC_Os02g04940.1) | Non-Synonymous SNP |