Detailed information of SNP:



SNP ID: sf0202310604(Gbrowse)

Chromosome: chr02

Position: 2310604
Major allele: C

Minor allele: T

Reference allele: C

Allele Frequencies:


NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.


PopulationsPopulation SizeFrequency of C(major allele)Frequency of T(minor allele)
All1411 95.61% 4.39%
All Indica799 99.75% 0.25%
All Japonica490 87.96% 12.04%
Aus67 100.00% 0.00%
Indica I375 99.73% 0.27%
Indica II213 99.53% 0.47%
Indica Intermediate211 100.00% 0.00%
Temperate Japonica334 94.61% 5.39%
Tropical Japonica92 68.48% 31.52%
Japonica Intermediate64 81.25% 18.75%
Group VI/Aromatic14 100.00% 0.00%
Intermediate41 97.56% 2.44%

Allele Var Effect:


SNP ID Var Gene Effect/Location
sf0202310604 C->T INTERGENIC None