Detailed information of SNP:
|
SNP ID:
sf0202318101(Gbrowse)
Chromosome: chr02 Position: 2318101 |
Major allele:
A
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1383 | 51.70% | 48.30% |
| All Indica | 768 | 82.81% | 17.19% |
| All Japonica | 494 | 1.62% | 98.38% |
| Aus | 66 | 78.79% | 21.21% |
| Indica I | 356 | 80.62% | 19.38% |
| Indica II | 207 | 86.47% | 13.53% |
| Indica Intermediate | 205 | 82.93% | 17.07% |
| Temperate Japonica | 335 | 0.90% | 99.10% |
| Tropical Japonica | 91 | 5.49% | 94.51% |
| Japonica Intermediate | 68 | 0.00% | 100.00% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 41 | 43.90% | 56.10% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0202318101 | G->A | LOC_Os02g04950(LOC_Os02g04950.1) | UTR_3_PRIME |