Detailed information of SNP:
|
SNP ID:
sf0202324013(Gbrowse)
Chromosome: chr02 Position: 2324013 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1415 | 53.00% | 47.00% |
| All Indica | 798 | 76.07% | 23.93% |
| All Japonica | 496 | 14.11% | 85.89% |
| Aus | 67 | 80.60% | 19.40% |
| Indica I | 375 | 76.53% | 23.47% |
| Indica II | 213 | 71.36% | 28.64% |
| Indica Intermediate | 210 | 80.00% | 20.00% |
| Temperate Japonica | 335 | 1.19% | 98.81% |
| Tropical Japonica | 93 | 63.44% | 36.56% |
| Japonica Intermediate | 68 | 10.29% | 89.71% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 40 | 45.00% | 55.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0202324013 | T->C | INTERGENIC | None |