Detailed information of SNP:
|
SNP ID:
sf0202324481(Gbrowse)
Chromosome: chr02 Position: 2324481 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1416 | 62.22% | 37.78% |
| All Indica | 799 | 95.12% | 4.88% |
| All Japonica | 496 | 8.87% | 91.13% |
| Aus | 66 | 86.36% | 13.64% |
| Indica I | 375 | 92.27% | 7.73% |
| Indica II | 213 | 98.12% | 1.88% |
| Indica Intermediate | 211 | 97.16% | 2.84% |
| Temperate Japonica | 335 | 5.97% | 94.03% |
| Tropical Japonica | 93 | 11.83% | 88.17% |
| Japonica Intermediate | 68 | 19.12% | 80.88% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 41 | 46.34% | 53.66% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0202324481 | A->G | INTERGENIC | None |