Detailed information of SNP:
|
SNP ID:
sf0202330987(Gbrowse)
Chromosome: chr02 Position: 2330987 |
Major allele:
C
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1419 | 76.53% | 23.47% |
| All Indica | 799 | 99.62% | 0.38% |
| All Japonica | 497 | 36.42% | 63.58% |
| Aus | 67 | 92.54% | 7.46% |
| Indica I | 375 | 99.47% | 0.53% |
| Indica II | 213 | 99.53% | 0.47% |
| Indica Intermediate | 211 | 100.00% | 0.00% |
| Temperate Japonica | 335 | 16.72% | 83.28% |
| Tropical Japonica | 94 | 90.43% | 9.57% |
| Japonica Intermediate | 68 | 58.82% | 41.18% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 78.57% | 21.43% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0202330987 | G->C | INTERGENIC | None |