Detailed information of SNP:
|
SNP ID:
sf0202346296(Gbrowse)
Chromosome: chr02 Position: 2346296 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1419 | 85.20% | 14.80% |
| All Indica | 799 | 97.37% | 2.63% |
| All Japonica | 497 | 65.39% | 34.61% |
| Aus | 67 | 86.57% | 13.43% |
| Indica I | 375 | 95.47% | 4.53% |
| Indica II | 213 | 99.53% | 0.47% |
| Indica Intermediate | 211 | 98.58% | 1.42% |
| Temperate Japonica | 335 | 83.58% | 16.42% |
| Tropical Japonica | 94 | 15.96% | 84.04% |
| Japonica Intermediate | 68 | 44.12% | 55.88% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 80.95% | 19.05% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0202346296 | C->T | INTERGENIC | None |