Detailed information of SNP:
|
SNP ID:
sf0202348988(Gbrowse)
Chromosome: chr02 Position: 2348988 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1373 | 96.94% | 3.06% |
| All Indica | 754 | 94.56% | 5.44% |
| All Japonica | 497 | 99.80% | 0.20% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 352 | 92.90% | 7.10% |
| Indica II | 203 | 95.57% | 4.43% |
| Indica Intermediate | 199 | 96.48% | 3.52% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 100.00% | 0.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0202348988 | T->C | INTERGENIC | None |