Detailed information of SNP:
|
SNP ID:
sf0202387671(Gbrowse)
Chromosome: chr02 Position: 2387671 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1397 | 80.96% | 19.04% |
| All Indica | 799 | 99.87% | 0.13% |
| All Japonica | 478 | 46.65% | 53.35% |
| Aus | 65 | 95.38% | 4.62% |
| Indica I | 375 | 99.73% | 0.27% |
| Indica II | 213 | 100.00% | 0.00% |
| Indica Intermediate | 211 | 100.00% | 0.00% |
| Temperate Japonica | 320 | 28.75% | 71.25% |
| Tropical Japonica | 91 | 95.60% | 4.40% |
| Japonica Intermediate | 67 | 65.67% | 34.33% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 82.93% | 17.07% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0202387671 | A->G | INTERGENIC | None |