Detailed information of SNP:
|
SNP ID:
sf0202440499(Gbrowse)
Chromosome: chr02 Position: 2440499 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1329 | 62.75% | 37.25% |
| All Indica | 765 | 82.61% | 17.39% |
| All Japonica | 496 | 31.85% | 68.15% |
| Aus | 20 | 65.00% | 35.00% |
| Indica I | 352 | 90.34% | 9.66% |
| Indica II | 206 | 69.42% | 30.58% |
| Indica Intermediate | 207 | 82.61% | 17.39% |
| Temperate Japonica | 335 | 11.94% | 88.06% |
| Tropical Japonica | 93 | 87.10% | 12.90% |
| Japonica Intermediate | 68 | 54.41% | 45.59% |
| Group VI/Aromatic | 13 | 76.92% | 23.08% |
| Intermediate | 35 | 60.00% | 40.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0202440499 | A->G | LOC_Os02g05110(LOC_Os02g05110.1) | Non-Synonymous SNP |