Detailed information of SNP:
|
SNP ID:
sf0202448998(Gbrowse)
Chromosome: chr02 Position: 2448998 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1417 | 89.27% | 10.73% |
| All Indica | 797 | 88.46% | 11.54% |
| All Japonica | 497 | 99.80% | 0.20% |
| Aus | 67 | 25.37% | 74.63% |
| Indica I | 373 | 82.84% | 17.16% |
| Indica II | 213 | 97.18% | 2.82% |
| Indica Intermediate | 211 | 89.57% | 10.43% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 80.95% | 19.05% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0202448998 | A->G | INTERGENIC | None |