Detailed information of SNP:
|
SNP ID:
sf0202453101(Gbrowse)
Chromosome: chr02 Position: 2453101 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1153 | 75.11% | 24.89% |
| All Indica | 606 | 94.39% | 5.61% |
| All Japonica | 438 | 45.43% | 54.57% |
| Aus | 60 | 93.33% | 6.67% |
| Indica I | 253 | 93.68% | 6.32% |
| Indica II | 166 | 95.78% | 4.22% |
| Indica Intermediate | 187 | 94.12% | 5.88% |
| Temperate Japonica | 332 | 51.51% | 48.49% |
| Tropical Japonica | 46 | 21.74% | 78.26% |
| Japonica Intermediate | 60 | 30.00% | 70.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 35 | 71.43% | 28.57% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0202453101 | A->G | INTERGENIC | None |