Detailed information of SNP:
|
SNP ID:
sf0202488593(Gbrowse)
Chromosome: chr02 Position: 2488593 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1379 | 77.59% | 22.41% |
| All Indica | 790 | 74.05% | 25.95% |
| All Japonica | 470 | 82.34% | 17.66% |
| Aus | 66 | 83.33% | 16.67% |
| Indica I | 371 | 57.68% | 42.32% |
| Indica II | 210 | 86.67% | 13.33% |
| Indica Intermediate | 209 | 90.43% | 9.57% |
| Temperate Japonica | 325 | 98.46% | 1.54% |
| Tropical Japonica | 82 | 18.29% | 81.71% |
| Japonica Intermediate | 63 | 82.54% | 17.46% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 39 | 74.36% | 25.64% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0202488593 | A->G | LOC_Os02g05199(LOC_Os02g05199.2) | UTR_3_PRIME |
| sf0202488593 | A->G | LOC_Os02g05199(LOC_Os02g05199.1) | UTR_3_PRIME |
| sf0202488593 | A->G | LOC_Os02g05199(LOC_Os02g05199.6) | UTR_3_PRIME |
| sf0202488593 | A->G | LOC_Os02g05199(LOC_Os02g05199.5) | UTR_3_PRIME |
| sf0202488593 | A->G | LOC_Os02g05199(LOC_Os02g05199.4) | UTR_3_PRIME |
| sf0202488593 | A->G | LOC_Os02g05199(LOC_Os02g05199.3) | UTR_3_PRIME |