Detailed information of SNP:
|
SNP ID:
sf0202488697(Gbrowse)
Chromosome: chr02 Position: 2488697 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1419 | 85.06% | 14.94% |
| All Indica | 799 | 99.87% | 0.13% |
| All Japonica | 497 | 58.55% | 41.45% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 99.73% | 0.27% |
| Indica II | 213 | 100.00% | 0.00% |
| Indica Intermediate | 211 | 100.00% | 0.00% |
| Temperate Japonica | 335 | 45.07% | 54.93% |
| Tropical Japonica | 94 | 95.74% | 4.26% |
| Japonica Intermediate | 68 | 73.53% | 26.47% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 88.10% | 11.90% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0202488697 | A->G | LOC_Os02g05199(LOC_Os02g05199.2) | UTR_3_PRIME |
| sf0202488697 | A->G | LOC_Os02g05199(LOC_Os02g05199.1) | UTR_3_PRIME |
| sf0202488697 | A->G | LOC_Os02g05199(LOC_Os02g05199.6) | UTR_3_PRIME |
| sf0202488697 | A->G | LOC_Os02g05199(LOC_Os02g05199.5) | UTR_3_PRIME |
| sf0202488697 | A->G | LOC_Os02g05199(LOC_Os02g05199.4) | UTR_3_PRIME |
| sf0202488697 | A->G | LOC_Os02g05199(LOC_Os02g05199.3) | UTR_3_PRIME |