Detailed information of SNP:
|
SNP ID:
sf0202518754(Gbrowse)
Chromosome: chr02 Position: 2518754 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1418 | 98.17% | 1.83% |
| All Indica | 799 | 99.87% | 0.13% |
| All Japonica | 496 | 95.36% | 4.64% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 99.73% | 0.27% |
| Indica II | 213 | 100.00% | 0.00% |
| Indica Intermediate | 211 | 100.00% | 0.00% |
| Temperate Japonica | 334 | 94.31% | 5.69% |
| Tropical Japonica | 94 | 95.74% | 4.26% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 95.24% | 4.76% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0202518754 | C->T | LOC_Os02g05244(LOC_Os02g05244.1) | UTR_3_PRIME |
| sf0202518754 | C->T | LOC_Os02g05244(LOC_Os02g05244.2) | INTRON |