Detailed information of SNP:
|
SNP ID:
sf0202528512(Gbrowse)
Chromosome: chr02 Position: 2528512 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1395 | 96.56% | 3.44% |
| All Indica | 799 | 97.87% | 2.13% |
| All Japonica | 496 | 100.00% | 0.00% |
| Aus | 50 | 48.00% | 52.00% |
| Indica I | 375 | 98.13% | 1.87% |
| Indica II | 213 | 98.59% | 1.41% |
| Indica Intermediate | 211 | 96.68% | 3.32% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 93 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 11 | 90.91% | 9.09% |
| Intermediate | 39 | 89.74% | 10.26% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0202528512 | C->T | LOC_Os02g05260(LOC_Os02g05260.1) | Non-Synonymous SNP |