Detailed information of SNP:
|
SNP ID:
sf0202529813(Gbrowse)
Chromosome: chr02 Position: 2529813 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1376 | 88.01% | 11.99% |
| All Indica | 799 | 100.00% | 0.00% |
| All Japonica | 455 | 64.62% | 35.38% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 213 | 100.00% | 0.00% |
| Indica Intermediate | 211 | 100.00% | 0.00% |
| Temperate Japonica | 297 | 52.19% | 47.81% |
| Tropical Japonica | 93 | 96.77% | 3.23% |
| Japonica Intermediate | 65 | 75.38% | 24.62% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 90.24% | 9.76% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0202529813 | A->G | LOC_Os02g05260(LOC_Os02g05260.1) | Non-Synonymous SNP |