Detailed information of SNP:
|
SNP ID:
sf0202629948(Gbrowse)
Chromosome: chr02 Position: 2629948 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1381 | 83.49% | 16.51% |
| All Indica | 799 | 98.62% | 1.38% |
| All Japonica | 484 | 57.85% | 42.15% |
| Aus | 48 | 87.50% | 12.50% |
| Indica I | 375 | 97.07% | 2.93% |
| Indica II | 213 | 100.00% | 0.00% |
| Indica Intermediate | 211 | 100.00% | 0.00% |
| Temperate Japonica | 323 | 43.34% | 56.66% |
| Tropical Japonica | 93 | 96.77% | 3.23% |
| Japonica Intermediate | 68 | 73.53% | 26.47% |
| Group VI/Aromatic | 13 | 100.00% | 0.00% |
| Intermediate | 37 | 81.08% | 18.92% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0202629948 | A->G | INTERGENIC | None |