Detailed information of SNP:
|
SNP ID:
sf0202692020(Gbrowse)
Chromosome: chr02 Position: 2692020 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1375 | 55.13% | 44.87% |
| All Indica | 763 | 27.00% | 73.00% |
| All Japonica | 493 | 99.80% | 0.20% |
| Aus | 65 | 27.69% | 72.31% |
| Indica I | 355 | 33.80% | 66.20% |
| Indica II | 205 | 13.17% | 86.83% |
| Indica Intermediate | 203 | 29.06% | 70.94% |
| Temperate Japonica | 333 | 100.00% | 0.00% |
| Tropical Japonica | 93 | 98.92% | 1.08% |
| Japonica Intermediate | 67 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 40 | 72.50% | 27.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0202692020 | G->A | INTERGENIC | None |