Detailed information of SNP:
|
SNP ID:
sf0202715351(Gbrowse)
Chromosome: chr02 Position: 2715351 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1416 | 91.17% | 8.83% |
| All Indica | 796 | 96.61% | 3.39% |
| All Japonica | 497 | 84.91% | 15.09% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 95.47% | 4.53% |
| Indica II | 212 | 98.58% | 1.42% |
| Indica Intermediate | 209 | 96.65% | 3.35% |
| Temperate Japonica | 335 | 79.40% | 20.60% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 91.18% | 8.82% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 42 | 76.19% | 23.81% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0202715351 | A->G | INTERGENIC | None |