Detailed information of SNP:
|
SNP ID:
sf0202716110(Gbrowse)
Chromosome: chr02 Position: 2716110 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1413 | 91.15% | 8.85% |
| All Indica | 798 | 97.12% | 2.88% |
| All Japonica | 493 | 84.18% | 15.82% |
| Aus | 67 | 98.51% | 1.49% |
| Indica I | 374 | 96.26% | 3.74% |
| Indica II | 213 | 98.59% | 1.41% |
| Indica Intermediate | 211 | 97.16% | 2.84% |
| Temperate Japonica | 331 | 78.55% | 21.45% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 89.71% | 10.29% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 41 | 75.61% | 24.39% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0202716110 | T->C | INTERGENIC | None |