Detailed information of SNP:
|
SNP ID:
sf0202718321(Gbrowse)
Chromosome: chr02 Position: 2718321 |
Major allele:
T
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1417 | 56.67% | 43.33% |
| All Indica | 798 | 92.36% | 7.64% |
| All Japonica | 497 | 0.40% | 99.60% |
| Aus | 67 | 71.64% | 28.36% |
| Indica I | 375 | 91.20% | 8.80% |
| Indica II | 212 | 95.28% | 4.72% |
| Indica Intermediate | 211 | 91.47% | 8.53% |
| Temperate Japonica | 335 | 0.00% | 100.00% |
| Tropical Japonica | 94 | 2.13% | 97.87% |
| Japonica Intermediate | 68 | 0.00% | 100.00% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 41 | 36.59% | 63.41% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0202718321 | C->T | INTERGENIC | None |