Detailed information of SNP:
|
SNP ID:
sf0202720506(Gbrowse)
Chromosome: chr02 Position: 2720506 |
Major allele:
T
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1419 | 65.12% | 34.88% |
| All Indica | 799 | 94.74% | 5.26% |
| All Japonica | 497 | 15.69% | 84.31% |
| Aus | 67 | 74.63% | 25.37% |
| Indica I | 375 | 92.80% | 7.20% |
| Indica II | 213 | 99.53% | 0.47% |
| Indica Intermediate | 211 | 93.36% | 6.64% |
| Temperate Japonica | 335 | 20.60% | 79.40% |
| Tropical Japonica | 94 | 2.13% | 97.87% |
| Japonica Intermediate | 68 | 10.29% | 89.71% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 59.52% | 40.48% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0202720506 | C->T | INTERGENIC | None |