Detailed information of SNP:
|
SNP ID:
sf0202722000(Gbrowse)
Chromosome: chr02 Position: 2722000 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1419 | 65.19% | 34.81% |
| All Indica | 799 | 94.74% | 5.26% |
| All Japonica | 497 | 15.69% | 84.31% |
| Aus | 67 | 74.63% | 25.37% |
| Indica I | 375 | 92.80% | 7.20% |
| Indica II | 213 | 99.53% | 0.47% |
| Indica Intermediate | 211 | 93.36% | 6.64% |
| Temperate Japonica | 335 | 20.60% | 79.40% |
| Tropical Japonica | 94 | 3.19% | 96.81% |
| Japonica Intermediate | 68 | 8.82% | 91.18% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 61.90% | 38.10% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0202722000 | T->C | INTERGENIC | None |