Detailed information of SNP:
|
SNP ID:
sf0202725083(Gbrowse)
Chromosome: chr02 Position: 2725083 |
Major allele:
A
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1419 | 60.18% | 39.82% |
| All Indica | 799 | 86.11% | 13.89% |
| All Japonica | 497 | 15.49% | 84.51% |
| Aus | 67 | 74.63% | 25.37% |
| Indica I | 375 | 77.07% | 22.93% |
| Indica II | 213 | 97.65% | 2.35% |
| Indica Intermediate | 211 | 90.52% | 9.48% |
| Temperate Japonica | 335 | 20.60% | 79.40% |
| Tropical Japonica | 94 | 2.13% | 97.87% |
| Japonica Intermediate | 68 | 8.82% | 91.18% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 59.52% | 40.48% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0202725083 | G->A | LOC_Os02g05600(LOC_Os02g05600.1) | UTR_3_PRIME |