Detailed information of SNP:
|
SNP ID:
sf0202726564(Gbrowse)
Chromosome: chr02 Position: 2726564 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1416 | 81.43% | 18.57% |
| All Indica | 796 | 77.39% | 22.61% |
| All Japonica | 497 | 84.91% | 15.09% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 74.93% | 25.07% |
| Indica II | 212 | 74.53% | 25.47% |
| Indica Intermediate | 209 | 84.69% | 15.31% |
| Temperate Japonica | 335 | 79.10% | 20.90% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 92.65% | 7.35% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 80.95% | 19.05% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0202726564 | A->G | INTERGENIC | None |