Detailed information of SNP:
|
SNP ID:
sf0202731070(Gbrowse)
Chromosome: chr02 Position: 2731070 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1419 | 53.21% | 46.79% |
| All Indica | 799 | 37.05% | 62.95% |
| All Japonica | 497 | 84.31% | 15.69% |
| Aus | 67 | 25.37% | 74.63% |
| Indica I | 375 | 48.53% | 51.47% |
| Indica II | 213 | 28.64% | 71.36% |
| Indica Intermediate | 211 | 25.12% | 74.88% |
| Temperate Japonica | 335 | 79.10% | 20.90% |
| Tropical Japonica | 94 | 97.87% | 2.13% |
| Japonica Intermediate | 68 | 91.18% | 8.82% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 42 | 54.76% | 45.24% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0202731070 | A->G | LOC_Os02g05610(LOC_Os02g05610.1) | INTRON |