Detailed information of SNP:
|
SNP ID:
sf0202747653(Gbrowse)
Chromosome: chr02 Position: 2747653 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1338 | 80.19% | 19.81% |
| All Indica | 719 | 65.51% | 34.49% |
| All Japonica | 497 | 99.60% | 0.40% |
| Aus | 67 | 86.57% | 13.43% |
| Indica I | 371 | 69.27% | 30.73% |
| Indica II | 164 | 66.46% | 33.54% |
| Indica Intermediate | 184 | 57.07% | 42.93% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 85.37% | 14.63% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0202747653 | A->G | INTERGENIC | None |