Detailed information of SNP:
|
SNP ID:
sf0202759099(Gbrowse)
Chromosome: chr02 Position: 2759099 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1346 | 99.26% | 0.74% |
| All Indica | 796 | 100.00% | 0.00% |
| All Japonica | 446 | 97.98% | 2.02% |
| Aus | 66 | 100.00% | 0.00% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 210 | 100.00% | 0.00% |
| Indica Intermediate | 211 | 100.00% | 0.00% |
| Temperate Japonica | 306 | 99.02% | 0.98% |
| Tropical Japonica | 76 | 94.74% | 5.26% |
| Japonica Intermediate | 64 | 96.88% | 3.12% |
| Group VI/Aromatic | 3 | 66.67% | 33.33% |
| Intermediate | 35 | 100.00% | 0.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0202759099 | G->A | INTERGENIC | None |