Detailed information of SNP:
|
SNP ID:
sf0202764679(Gbrowse)
Chromosome: chr02 Position: 2764679 |
Major allele:
A
Minor allele: T Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1417 | 51.38% | 48.62% |
| All Indica | 797 | 78.17% | 21.83% |
| All Japonica | 497 | 3.82% | 96.18% |
| Aus | 67 | 74.63% | 25.37% |
| Indica I | 373 | 63.00% | 37.00% |
| Indica II | 213 | 96.24% | 3.76% |
| Indica Intermediate | 211 | 86.73% | 13.27% |
| Temperate Japonica | 335 | 2.69% | 97.31% |
| Tropical Japonica | 94 | 4.26% | 95.74% |
| Japonica Intermediate | 68 | 8.82% | 91.18% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 52.38% | 47.62% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0202764679 | A->T | INTERGENIC | None |