Detailed information of SNP:
|
SNP ID:
sf0202777370(Gbrowse)
Chromosome: chr02 Position: 2777370 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1343 | 94.79% | 5.21% |
| All Indica | 798 | 100.00% | 0.00% |
| All Japonica | 426 | 85.92% | 14.08% |
| Aus | 67 | 95.52% | 4.48% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 212 | 100.00% | 0.00% |
| Indica Intermediate | 211 | 100.00% | 0.00% |
| Temperate Japonica | 299 | 97.32% | 2.68% |
| Tropical Japonica | 68 | 33.82% | 66.18% |
| Japonica Intermediate | 59 | 88.14% | 11.86% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 38 | 81.58% | 18.42% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0202777370 | T->C | LOC_Os02g05680(LOC_Os02g05680.2) | UTR_5_PRIME |
| sf0202777370 | T->C | LOC_Os02g05680(LOC_Os02g05680.1) | INTRON |