Detailed information of SNP:
|
SNP ID:
sf0202784763(Gbrowse)
Chromosome: chr02 Position: 2784763 |
Major allele:
C
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1419 | 62.86% | 37.14% |
| All Indica | 799 | 74.72% | 25.28% |
| All Japonica | 497 | 39.44% | 60.56% |
| Aus | 67 | 79.10% | 20.90% |
| Indica I | 375 | 63.47% | 36.53% |
| Indica II | 213 | 83.57% | 16.43% |
| Indica Intermediate | 211 | 85.78% | 14.22% |
| Temperate Japonica | 335 | 29.25% | 70.75% |
| Tropical Japonica | 94 | 81.91% | 18.09% |
| Japonica Intermediate | 68 | 30.88% | 69.12% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 76.19% | 23.81% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0202784763 | G->C | INTERGENIC | None |