Detailed information of SNP:
|
SNP ID:
sf0202817093(Gbrowse)
Chromosome: chr02 Position: 2817093 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1363 | 96.85% | 3.15% |
| All Indica | 798 | 100.00% | 0.00% |
| All Japonica | 446 | 90.81% | 9.19% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 212 | 100.00% | 0.00% |
| Indica Intermediate | 211 | 100.00% | 0.00% |
| Temperate Japonica | 310 | 87.42% | 12.58% |
| Tropical Japonica | 77 | 100.00% | 0.00% |
| Japonica Intermediate | 59 | 96.61% | 3.39% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 38 | 94.74% | 5.26% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0202817093 | A->G | LOC_Os02g05730(LOC_Os02g05730.1) | Non-Synonymous SNP |