Detailed information of SNP:
|
SNP ID:
sf0202876265(Gbrowse)
Chromosome: chr02 Position: 2876265 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1418 | 85.68% | 14.32% |
| All Indica | 799 | 99.75% | 0.25% |
| All Japonica | 497 | 61.97% | 38.03% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 213 | 99.06% | 0.94% |
| Indica Intermediate | 211 | 100.00% | 0.00% |
| Temperate Japonica | 335 | 71.64% | 28.36% |
| Tropical Japonica | 94 | 21.28% | 78.72% |
| Japonica Intermediate | 68 | 70.59% | 29.41% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 70.73% | 29.27% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0202876265 | G->A | LOC_Os02g05830(LOC_Os02g05830.1) | UTR_3_PRIME |
| sf0202876265 | G->A | LOC_Os02g05830(LOC_Os02g05830.2) | UTR_3_PRIME |