Detailed information of SNP:
|
SNP ID:
sf0202888282(Gbrowse)
Chromosome: chr02 Position: 2888282 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1416 | 89.83% | 10.17% |
| All Indica | 799 | 99.75% | 0.25% |
| All Japonica | 494 | 72.87% | 27.13% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 213 | 99.06% | 0.94% |
| Indica Intermediate | 211 | 100.00% | 0.00% |
| Temperate Japonica | 335 | 85.07% | 14.93% |
| Tropical Japonica | 92 | 26.09% | 73.91% |
| Japonica Intermediate | 67 | 76.12% | 23.88% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 80.95% | 19.05% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0202888282 | G->A | LOC_Os02g05850(LOC_Os02g05850.1) | Non-Synonymous SNP |