Detailed information of SNP:
|
SNP ID:
sf0202891010(Gbrowse)
Chromosome: chr02 Position: 2891010 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1393 | 91.46% | 8.54% |
| All Indica | 799 | 99.50% | 0.50% |
| All Japonica | 474 | 76.79% | 23.21% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 213 | 99.06% | 0.94% |
| Indica Intermediate | 211 | 99.05% | 0.95% |
| Temperate Japonica | 320 | 90.62% | 9.38% |
| Tropical Japonica | 89 | 22.47% | 77.53% |
| Japonica Intermediate | 65 | 83.08% | 16.92% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 39 | 87.18% | 12.82% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0202891010 | T->C | LOC_Os02g05850(LOC_Os02g05850.1) | Non-Synonymous SNP |