Detailed information of SNP:



SNP ID: sf0202909301(Gbrowse)

Chromosome: chr02

Position: 2909301
Major allele: G

Minor allele: A

Reference allele: A

Allele Frequencies:


NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.


PopulationsPopulation SizeFrequency of G(major allele)Frequency of A(minor allele)
All1411 81.08% 18.92%
All Indica793 98.61% 1.39%
All Japonica495 61.41% 38.59%
Aus67 17.91% 82.09%
Indica I370 97.57% 2.43%
Indica II212 99.53% 0.47%
Indica Intermediate211 99.53% 0.47%
Temperate Japonica334 58.08% 41.92%
Tropical Japonica93 88.17% 11.83%
Japonica Intermediate68 41.18% 58.82%
Group VI/Aromatic14 92.86% 7.14%
Intermediate42 78.57% 21.43%

Allele Var Effect:


SNP ID Var Gene Effect/Location
sf0202909301 A->G LOC_Os02g05880(LOC_Os02g05880.1) INTRON