Detailed information of SNP:
|
SNP ID:
sf0202909301(Gbrowse)
Chromosome: chr02 Position: 2909301 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1411 | 81.08% | 18.92% |
| All Indica | 793 | 98.61% | 1.39% |
| All Japonica | 495 | 61.41% | 38.59% |
| Aus | 67 | 17.91% | 82.09% |
| Indica I | 370 | 97.57% | 2.43% |
| Indica II | 212 | 99.53% | 0.47% |
| Indica Intermediate | 211 | 99.53% | 0.47% |
| Temperate Japonica | 334 | 58.08% | 41.92% |
| Tropical Japonica | 93 | 88.17% | 11.83% |
| Japonica Intermediate | 68 | 41.18% | 58.82% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 78.57% | 21.43% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0202909301 | A->G | LOC_Os02g05880(LOC_Os02g05880.1) | INTRON |