Detailed information of SNP:
|
SNP ID:
sf0202989090(Gbrowse)
Chromosome: chr02 Position: 2989090 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1388 | 94.67% | 5.33% |
| All Indica | 778 | 91.52% | 8.48% |
| All Japonica | 489 | 100.00% | 0.00% |
| Aus | 67 | 97.01% | 2.99% |
| Indica I | 364 | 90.11% | 9.89% |
| Indica II | 207 | 91.79% | 8.21% |
| Indica Intermediate | 207 | 93.72% | 6.28% |
| Temperate Japonica | 332 | 100.00% | 0.00% |
| Tropical Japonica | 90 | 100.00% | 0.00% |
| Japonica Intermediate | 67 | 100.00% | 0.00% |
| Group VI/Aromatic | 12 | 83.33% | 16.67% |
| Intermediate | 42 | 90.48% | 9.52% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0202989090 | C->T | LOC_Os02g05990(LOC_Os02g05990.1) | Synonymous |