Detailed information of SNP:
|
SNP ID:
sf0202989687(Gbrowse)
Chromosome: chr02 Position: 2989687 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1409 | 70.83% | 29.17% |
| All Indica | 789 | 91.13% | 8.87% |
| All Japonica | 497 | 33.60% | 66.40% |
| Aus | 67 | 95.52% | 4.48% |
| Indica I | 370 | 90.27% | 9.73% |
| Indica II | 212 | 93.87% | 6.13% |
| Indica Intermediate | 207 | 89.86% | 10.14% |
| Temperate Japonica | 335 | 21.49% | 78.51% |
| Tropical Japonica | 94 | 81.91% | 18.09% |
| Japonica Intermediate | 68 | 26.47% | 73.53% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 80.95% | 19.05% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0202989687 | T->C | LOC_Os02g05990(LOC_Os02g05990.1) | Synonymous |