Detailed information of SNP:
|
SNP ID:
sf0203000554(Gbrowse)
Chromosome: chr02 Position: 3000554 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1377 | 64.05% | 35.95% |
| All Indica | 768 | 55.34% | 44.66% |
| All Japonica | 489 | 75.26% | 24.74% |
| Aus | 65 | 93.85% | 6.15% |
| Indica I | 357 | 49.02% | 50.98% |
| Indica II | 203 | 56.16% | 43.84% |
| Indica Intermediate | 208 | 65.38% | 34.62% |
| Temperate Japonica | 330 | 83.64% | 16.36% |
| Tropical Japonica | 92 | 42.39% | 57.61% |
| Japonica Intermediate | 67 | 79.10% | 20.90% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 41 | 65.85% | 34.15% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0203000554 | G->A | INTERGENIC | None |